PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF104900020CFD_t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 93aa    MW: 10531.3 Da    PI: 8.2337
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF104900020CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.8e-102741998
                             -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                       B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                             p +f++++ +++   ++ +l++ +g sW+v++  +   gr++l +GW  ++  ++ k g +v+Fkl      +l+v +f+
  TRAES3BF104900020CFD_t1  2 PLDFTKHFVLVP---TEFKLRNNTGCSWKVTV--KLMNGRVTLDQGWATYAVVHQNKIGYMVTFKLLT--PDTLKVIIFD 74
                             777887777785...469**************..777778*************************865..4446777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.926176IPR003340B3 DNA binding domain
PfamPF023628.1E-8274IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-11576IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-11776IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MPLDFTKHFV LVPTEFKLRN NTGCSWKVTV KLMNGRVTLD QGWATYAVVH QNKIGYMVTF  60
KLLTPDTLKV IIFDDDGIEV VNKCGKHDEA FAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-155HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C4BEH61e-64A0A0C4BEH6_WHEAT; Uncharacterized protein
STRINGMLOC_3052.11e-52(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1723937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.12e-06B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]